海洋生物学
张晓军,男,中国科学院海洋研究所实验海洋生物学重点实验室研究员,博士生导师。1994年毕业于青岛海洋大学海洋生物专业获学士学位,2001年于中国科学院海洋研究所获海洋生物学博士学位,2006-2008年美国Texas A&M大学访问学者、博士后。主要从事海洋生物基因组学、遗传学、细胞生物学和基因工程等方面研究。
一、研究领域  
1、海洋生物基因组学和功能基因组学;
2、对虾等海水养殖动物生长和品质性状的遗传学基础;
3、海洋生物基因资源开发利用。
二、招生专业及方向
1、海洋生物学,基因组学方向;繁殖、发育与调控技术方向;
2、生物与医药,海洋生物工程方向
三、研究室及联系方式       
实验海洋生物学重点实验室
E-Mail: xjzhang@qdio.ac.cn, 0532-82898786
四、承担的主要科研项目
1.国家重点研发计划课题“虾南美白对虾生产性状形成及调控网络研究”,2022.12-2027.11,子课题负责人; 
2.国家重点研发计划项目“蓝色粮仓科技创新”重点专项课题“虾蟹类生长与品质性状的遗传调控机制研究”,2018.12-2022.12,课题负责人;
3.国家高技术研究发展计划(863 计划)课题“对虾功能基因开发与利用”,2012.1-2014.12,课题负责人;
4.国家自然科学基金面上项目“胰岛素样多肽和甲壳动物高血糖激素对凡纳滨对虾糖代谢的协同调控作用”,2023.1-2026.12,课题负责人;
5.国家自然科学基金面上项目“对虾类胰岛素多肽及其对生长和蜕皮的调控研究”,2020.1-2023.12,课题负责人; 
6.国家自然科学基金面上项目“20E早期应答基因及其在对虾生长中的调控机理研究”,2017.1-2020.12,课题负责人;
7.国家自然科学基金面上项目“对虾基因组DNA重复序列的分析和定位研究”,2012.1-2015.12,课题负责人;
8.国家自然科学基金面上项目“对虾免疫相关基因簇的研究”,2010.1-2012.12,课题负责人;
9.“科学”号 高端用户项目“采用多组学方法研究典型深远海甲壳动物和棘皮动物的环境适应特征”,2018.8-2020.10,课题负责人;
10.中国科学院实验海洋生物学重点实验室海洋生物重大成果支持计划项目“对虾和海参的基因组解析及其典型生命过程的分子基础研究”,2017.7-2018.7,课题负责人。
五、研究成果及奖励         
构建了凡纳滨对虾和栉孔扇贝BAC文库以及栉孔扇贝物理图谱;完成了凡纳滨对虾、中国明对虾、中华绒螯蟹和仿刺参等多个物种的全基因组测序和组装,并解析了这两类代表性海洋生物(甲壳动物和棘皮动物)一些独特的生命现象的分子基础;在对虾生长和品质性状的遗传解析及功能基因开发与利用等方面取得重要进展。研究成果在Nature Communications、PLoS Biology、Molecular Biology and Evolution、Communication Biology、Molecular Ecololgy、Proceedings of the Royal Society B、Open Biology、BMC Genomics等杂志上发表论文80余篇,被引2000多次。获得专利授权10余件。获山东省自然科学二等奖2次,山东省科学进步一等奖1次,国家海洋局海洋科学技术奖4次,大北农科技奖一等奖1次,青岛市拔尖人才。
六、代表性论文及著作
1.Zhang X#, Yuan J#, Sun Y#, Li S#, Gao Y#, Yu Y#, Liu C, Wang Q, Lv X, Zhang X, Ma KY, Wang X, Lin W, Wang L, Zhu X, Zhang C, Zhang J, Jin S, Yu K, Kong J, Xu P, Chen J, Zhang H, Sorgeloos P, Sagi A, Alcivar-Warren A, Liu Z, Wang L, Ruan J, Chu KH, Liu B, Li F, Xiang J. Penaeid shrimp genome provides insights into benthic adaptation and frequent molting. Nat Commun. 2019, 10(1):356.
2.Zhang X#, Sun L#, Yuan J#, Sun Y#, Gao Y#, Zhang L#, Li S, Dai H, Hamel JF, Liu C, Yu Y, Liu S, Lin W, Guo K, Jin S, Xu P, Storey KB, Huan P, Zhang T, Zhou Y, Zhang J, Lin C, Li X, Xing L, Huo D, Sun M, Wang L, Mercier A, Li F, Yang H, Xiang J. The sea cucumber genome provides insights into morphological evolution and visceral regeneration. PLoS Biol. 2017, 15(10): e2003790.
3.Cui Z#, Liu Y#, Yuan J#, Zhang X#, Ventura T#, Ma KY, Sun S, Song C, Zhan D, Yang Y, Liu H, Fan G, Cai Q, Du J, Qin J, Shi C, Hao S, Fitzgibbon QP, Smith GG, Xiang J, Chan TY, Hui M, Bao C, Li F, Chu KH. The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation. Nat Commun. 2021, 12(1):2395.
4.Yuan J#, Zhang X#, Wang M#, Sun Y, Liu C, Li S, Yu Y, Gao Y, Liu F, Zhang X, Kong J, Fan G, Zhang C, Feng L, Xiang J, Li F. Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp. Commun Biol. 2021, 4(1):186.
5.Liu C, Zhang X*, Yuan J, Xiang J, Li F*. Coding Genes Helped the Origination and Diversification of Intragenic MicroRNAs. Mol Biol Evol. 2025 Feb 3;42(2):msaf036.
6.Si S, Zhang X*, Yu Y, Zhong X, Zhang X, Yuan J, Chu KH, Li F. Molecular mechanisms of Mmd2 gene in regulating growth of the Pacific white shrimp Litopenaeus vannamei. Mar Life Sci Technol. 2025, 15;7(1):50-65.
7.Zhang C, Zhang X*, Si S, Sun M, Li A, Yuan J, Li F. Identification and Functional Analysis of a Key Gene in the CHH Gene Family for Glucose Metabolism in the Pacific White Shrimp Litopenaeus vannamei. Int J Mol Sci. 2025, 12;26(10):4612.
8.Zhu H, Zhang X*, Zhang X, Yuan J, Sha Z*, Li F. Comparative transcriptome analyses reveal the acute heat stress response of a cool-temperate shrimp Fenneropenaeus chinensis. J Therm Biol. 2025, 28;129:104087.
9.Yuan J#, Zhang X#, Zhang X#, Sun Y#, Liu C, Li S, Yu Y, Zhang C, Jin S, Wang M, Xiang J, Li F. An ancient whole-genome duplication in barnacles contributes to their diversification and intertidal sessile life adaptation. J Adv Res. 2024; 62:91-103.
10.Zhong X, Yu Yang, Zhang X*, Zhang X, Si S, Liu C, Yuan J, Li F. RNA sequencing and LncRNA identification in muscle of the Pacific white shrimp Litopenaeus vannamei at different growth rates. Aquaculture. 2024, 582,740534.
11.Su M, Zhang X*, Zhang X, Yuan J, Yang M, Li F. Comparative transcriptome analysis provides a glance into the regulatory of insulin-like peptide 1 gene in the Pacific white shrimp Litopenaeus vannamei. Aquaculture. 2024, 591, 741126.
12.Xia Y, Zhang X*, Zhang X, Zhu H, Zhong X, Song W, Yuan J, Sha Z, Li F. Gene structure, expression and function analysis of the MyoD gene in the Pacific white shrimp Litopenaeus vannamei. Gene. 2024, 30;921:148523.
13.Si S, Zhang X*, Yu Y, Zhang X, Zhong X, Yuan J, Yang S, Li F. Structure and function analyses of the Mmd2 gene in pacific white shrimp Litopenaeus vannamei. Front Genet. 2023, 7;14:1151193.
14.Yuan J#, Zhang X#, Kou Q#, Sun Y#, Liu C, Li S, Yu Y, Zhang C, Jin S, Xiang J, Li X*, Li F*. Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environment. BMC Biol. 2022, 13;20(1):113.
15.Yuan J, Zhang X*, Li S, Liu C, Yu Y, Zhang X, Xiang J, Li F*.  Convergent evolution of barnacles and molluscs sheds lights in origin and diversification of calcareous shell and sessile lifestyle. Proc. R. Soc. B. 2022, 289: 20221535.
16.Zhang X, Yuan J, Li F, Xiang J. Chitin Synthesis and Degradation in Crustaceans: A Genomic View and Application. Mar Drugs. 2021, 19(3):153.
17.Yuan J, Zhang X*, Li S, Liu C, Yu Y, Zhang X, Xiang J, Li F*. Convergent evolution of barnacles and molluscs sheds lights in origin and diversification of calcareous shell and sessile lifestyle. Proc. R. Soc. B 2022, 289: 20221535.
18.Liu C, Yuan J, Zhang X*, Jin S, Li F, Xiang J*. Clustering genomic organization of sea cucumber miRNAs impacts their evolution and expression. Genomics. 2021, 113(6):3544-3555.
19.Liu C, Yuan J, Zhang X*, Jin S, Li F*, Xiang J. tRNA copy number and codon usage in the sea cucumber genome provide insights into adaptive translation for saponin biosynthesis. Open Biol. 2021, 11(11):210190.
20.Yuan J, Zhang X*, Gao Y, Zhang X, Liu C, Xiang J, Li F*. Adaptation and molecular evidence for convergence in decapod crustaceans from deep-sea hydrothermal vent environments. Mol Ecol. 2020, 29(20):3954-3969.
论著:
Zhang X, Yuan J, Yu Y, Li F, Xiang J. Genome of shrimp and their potential applications, in The Shrimp Book II, edited by Victoria Alday-Sanz. 5m Books. 2022, p85-122.